Linkages are essentially determined by similarity measures that may be derived from multiple perspectives. For example, spatial linkages are usually generated based on localities of heterogeneous data, whereas semantic linkages can come from various properties, such as different physical meanings behind social relations. Many existing metric learning models focus on spatial linkages, but leave the rich semantic factors unconsidered. Similarities based on these models are usually overdetermined on linkages.

Residual networks (ResNet) and weight normalization play an important role in various deep learning applications. However, parameter initialization strategies have not been studied previously for weight normalized networks and, in practice, initialization methods designed for un-normalized networks are used as a proxy. Similarly, initialization for ResNets have also been studied for un-normalized networks and often under simplified settings ignoring the shortcut connection. To address these issues, we propose a novel parameter initialization strategy that avoids explosion/vanishment of information across layers for weight normalized networks with and without residual connections. The proposed strategy is based on a theoretical analysis using mean field approximation. We run over 2,500 experiments and evaluate our proposal on image datasets showing that the proposed initialization outperforms existing initialization methods in terms of generalization performance, robustness to hyper-parameter values and variance between seeds, especially when networks get deeper in which case existing methods fail to even start training. Finally, we show that using our initialization in conjunction with learning rate warmup is able to reduce the gap between the performance of weight normalized and batch normalized networks.

Predicting molecular impact on cellular function is a core challenge in therapeutic design. Phenomic experiments, designed to capture cellular morphology, utilize microscopy based techniques and demonstrate a high throughput solution for uncovering molecular impact on the cell. In this work, we learn a joint latent space between molecular structures and microscopy phenomic experiments, aligning paired samples with contrastive learning. Specifically, we study the problem of Contrastive PhenoMolecular Retrieval, which consists of zero-shot molecular structure identification conditioned on phenomic experiments. We assess challenges in multi-modal learning of phenomics and molecular modalities such as experimental batch effect, inactive molecule perturbations, and encoding perturbation concentration.

Classical optimization and learning-based methods are the two reigning paradigms in deformable image registration. While optimization-based methods boast generalizability across modalities and robust performance, learning-based methods promise peak performance, incorporating weak supervision and amortized optimization. However, the exact conditions for either paradigm to perform well over the other are shrouded and not explicitly outlined in the existing literature. In this paper, we make an explicit correspondence between the mutual information of the distribution of per-pixel intensity and labels, and the performance of classical registration methods. This strong correlation hints to the fact that architectural designs in learning-based methods is unlikely to affect this correlation, and therefore, the performance of learning-based methods. This hypothesis is thoroughly validated with state-of-the-art classical and learning-based methods. However, learningbased methods with weak supervision can perform high-fidelity intensity and label registration, which is not possible with classical methods. Next, we show that this high-fidelity feature learning does not translate to invariance to domain shift, and learning-based methods are sensitive to such changes in the data distribution. We reassess and recalibrate performance expectations from classical and DLIR methods under access to label supervision, training time, and its generalization capabilities under minor domain shifts.

Fine-grained understanding of objects, attributes, and relationships between objects is crucial for visual-language models (VLMs). To evaluate VLMs' fine-grained understanding, existing benchmarks primarily focus on evaluating VLMs' capability to distinguish between two very similar captions given an image. In this paper, our focus is on evaluating VLMs' capability to distinguish between two very similar images give a caption. To this end, we introduce a new, challenging benchmark termed Visual Minimal-Change Understanding (VisMin), which requires models to predict the correct image-caption match given two images and two captions. Importantly, the image pair (as well as the caption pair) contains minimal-changes, i.e., between the two images (as well as between the two captions), only one aspect changes at a time from among the following possible types of changes: object, attribute, count, and spatial relation.

Modeling stochastic and irregularly sampled time series is a challenging problem found in a wide range of applications, especially in medicine. Neural stochastic differential equations (Neural SDEs) are an attractive modeling technique for this problem, which parameterize the drift and diffusion terms of an SDE with neural networks. However, current algorithms for training Neural SDEs require backpropagation through the SDE dynamics, greatly limiting their scalability and stability. To address this, we propose Trajectory Flow Matching (TFM), which trains a Neural SDE in a simulation-free manner, bypassing backpropagation through the dynamics. TFM leverages the flow matching technique from generative modeling to model time series. In this work we first establish necessary conditions for TFM to learn time series data. Next, we present a reparameterization trick which improves training stability. Finally, we adapt TFM to the clinical time series setting, demonstrating improved performance on four clinical time series datasets both in terms of absolute performance and uncertainty prediction, a crucial parameter in this setting.

Recently, diffusion models have garnered significant interest in the field of text processing due to their many potential advantages compared to conventional autoregressive models. In this work, we propose Diffusion-of-Thought (DoT), a novel approach that integrates diffusion models with Chain-of-Thought, a well-established technique for improving the reasoning ability of autoregressive language models. In contrast to autoregressive language models that make decisions in a left-to-right, token-by-token manner, DoT allows reasoning steps to diffuse over time through a diffusion language model and offers greater flexibility in trading-off computation for reasoning performance. Our experimental results demonstrate the effectiveness of DoT in multi-digit multiplication, boolean logic, and grade school math problems, with a small diffusion model outperforming a much larger autoregressive model in both efficiency and accuracy.

Alternating least-squares (ALS) is a simple yet effective solver for canonical correlation analysis (CCA). In terms of ease of use, ALS is arguably practitioners' first choice. Despite recent provably guaranteed variants, the empirical performance often remains unsatisfactory. To promote the practical use of ALS for CCA, we propose truly alternating least-squares. Instead of approximately solving two independent linear systems, in each iteration, it simply solves two coupled linear systems of half the size. It turns out that this coupling procedure is able to bring significant performance improvements in practical setting.

The claim and evidence conflict pairs can be found at https://huggingface. The scope of our dataset is purely for scientific research. Conflict Verification: Ensuring that the default and conflict evidence are contradictory. The human evaluation results showed a high level of accuracy in our data generation process. We select models with 2B and 7B parameters for our analysis. Models with 7B and 70B parameters are selected for our analysis. To facilitate parallel training, we employ DeepSpeed Zero-Stage 3 [Ren et al., The prompt for generating semantic conflict descriptions is shown in Figure 1. The prompt for generating default evidence is shown in Table 6. The prompt for generating misinformation conflict evidence is shown in Table 7. The prompt for generating temporal conflict evidence is shown in Table 8.

Large language models (LLMs) have achieved impressive advancements across numerous disciplines, yet the critical issue of knowledge conflicts, a major source of hallucinations, has rarely been studied. While a few research explored the conflicts between the inherent knowledge of LLMs and the retrieved contextual knowledge, a comprehensive assessment of knowledge conflict in LLMs is still missing.